The gaps you're seeing don't necessarily come from a scam - it's just that two apartments with the same square footage can be very different in reality. A ground-floor unit facing a busy street isn't worth the same as a quiet fourth-floor apartment with a view. Same goes for the general condition, insulation, whether there's an elevator, or even just whether the neighborhood is gaining or losing appeal.
To evaluate properly, start by looking at comps - similar properties sold recently in the same area. Notaries have this data, and there are also specialized websites that give you a good sense of things. Then visit the apartment at different times: morning, afternoon, evening. That lets you see if it's noisy, how the natural light is, what the neighbors are like. Pay attention to details that cost a lot to fix: dampness in the corners, structural cracks, plumbing, electrical work that looks old. Ask for previous inspection reports if you can.
Also take some time to really explore the neighborhood on foot - not just drive to the apartment. Look at where the shops are, the transit, the schools if that matters to you. And honestly, bring in an expert or an architect for big purchases - it's not hundreds of euros and it can save you from nasty surprises. It might seem like a hassle but on a property in Lyon, it's really a drop in the bucket compared to the final price.